Detection of excess IBD segments in patients
0
2
Entering edit mode
3.6 years ago
Apprentice ▴ 160

Hi.

I have SNP array data for 10 case and 100 control subjects. I think that the case subjects have local shared IBD segments on chromosome 10.

So, I would like to detect excess IBD segments in case subjects. I could identify shared IBD segments in each pair of the all subjects using SHAPEIT2 and GERMLINE software. However, I don't know how to identify where the excess IBD segments are in case subjects.

Could you tell me how I do should?

IBD sgements SNP • 727 views
ADD COMMENT

Login before adding your answer.

Traffic: 2710 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6