pulling out TCR data
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6 months ago
roberts ▴ 40

Hello! I have successfully loaded my VDJ data into my seurate object. Once I have identified the cluster of CD4 and CD8 I want to be able to pull out all the VDJ barcodes, sequence, clonotype, etc. I saw that WhichCells() command lets you pick out cells that have a certain experssion, but when I do this I only get 3 results returned (there is a lot more CD8/CD4 than 3 cells). I was wondering if anyone had a good way to be able to sort VDJ into T4 and T8 cells and furthermore be able to compile a .csv? with all relevant information. Thank you!

Seurat R TCR RNA-Seq VDJ • 158 views
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