Chip-Seq Peak Annotation

Question

[NAIKANKIT1994]

Hello,

After using MACS 2, I have a list of peaks that I need to annotate. Pls suggest how do i annotate the peaks such that I am able to conclude whether the enrichment is at the Promoter region or within the gene or somewhere else. I have Linux as well macOS system at my disposal. Which tools will give the best annotation?

Answer 1

[jared.andrews07]

ChIPseeker is popular and easy to use.