cluster identification in seurat
1
0
Entering edit mode
13 months ago
roberts ▴ 40

Hello is there a program to define cell clusters or cell types in seurat or is the best option to look at gene expression maps and name the clusters yourself? Thank you!

Seurat scRNA-seq R • 1.2k views
ADD COMMENT
2
Entering edit mode
13 months ago

SingleR and similar programs used a correlation-based approach to label cell types. The Orchestrating Single Cell Analysis book also has a good section on this.

You can do it manually, but that leads to a fair amount of subjectivity and is often both painstaking and time-consuming. A mix of automated tools and manual curation lead to a process that is much more convenient and likely more accurate.

ADD COMMENT

Login before adding your answer.

Traffic: 2790 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6