Question: predict plasmid from bacterial WGS
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gravatar for zhangdengwei
5 months ago by
zhangdengwei130
zhangdengwei130 wrote:

Hi all,

I have some bacterial WGS datasets, and now I'd like to separate plasmid from chromosome for each draft genome. I got to know several tools are capable of doing this (e.g. PlasmidSeeker, mlplasmids, plasmidFinder), but I am struggling to select which is best as I am new to these tools. As far as I know, plasmidFinder may be the most commonly used to identify plasmid replicon, but I still have a concern about its accuracy. So, can you have any idea on which tool is better? Thanks in advance!

chromosome plasmid bacteria wgs • 164 views
ADD COMMENTlink written 5 months ago by zhangdengwei130
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