Hello! I have identified in my seurat object the top 10 clonotypes based on frequency. I used this code to find them
top10_clonotype <- table(Object$clonotype_id) top10_clonotype <- as.data.frame(top10_clonotype) top10_clonotype <- slice_max(top10_clonotype, order_by = top10$Freq, n=11)
I would like to then highlight them on my umap. I ran the line-
DimPlot(AD007, reduction = "umap", cells.highlight=top10). The number one clonotype frequency came up 22 times yet on the umap there was just one dot for it. Any suggestions? Please and thanks!