Question: (Closed) Mapping clonotypes on UMAP
0
ecl75 • 0 wrote:
Hello! I have identified in my seurat object the top 10 clonotypes based on frequency. I used this code to find them
top10_clonotype <- table(Object$clonotype_id)
top10_clonotype <- as.data.frame(top10_clonotype)
top10_clonotype <- slice_max(top10_clonotype, order_by = top10$Freq, n=11)
I would like to then highlight them on my umap. I ran the lineDimPlot(AD007, reduction = "umap", cells.highlight=top10). The number one clonotype frequency came up 22 times yet on the umap there was just one dot for it. Any suggestions? Please and thanks!
Hello ecl75!
Questions similar to yours can already be found at:
We have closed your question to allow us to keep similar content in the same thread.
If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.
Cheers!