Closed:Statistical analysis and visualization of HUMANnN3 output by MaAsLin2
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7 months ago
dpc ▴ 170

Hi there!!! I have two groups of samples: Case and Control. I have analyzed the shotgun metagenomic sequences with HUMAnN3 and got the three output files (gene family abundances, pathway abundances, path coverage) for each of the samples. Now I want to find out the differentially abundant gene families and pathways in the two groups and visualize them. Can I use MaAsLin2 for that? (I know I can use LefSe, but still searching for a better option and explore something new)

Thanks, dpc

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