Operon Prediction With Gene Annotations?

Question

[Tianyang Li]

HI,

What's a good tool to use to predict operons when I have the complete genome of a bacterium species and gene annotations?

Answer 1

[friveroll]

May be this database could help you

The Prokaryotic Operon DataBase (ProOpDB) constitutes one of the most precise and complete repository of operon predictions in our days. Using our novel and highly accurate operon algorithm, we have predicted the operon structures of more than 1,200 prokaryotic genomes.

http://operons.ibt.unam.mx/OperonPredictor/

Answer 2

[anne.de.jong]

Here is also Operon information on 5000 bacterial genomes: http://genome2d.molgenrug.nl/