I'm using the GATK germline short variant discovery (SNPs + Indels) pipeline.
After using HaplotypeCaller to call the GVCF, I'm not consolidating the variants using GenomicsDBImport. https://gatk.broadinstitute.org/hc/en-us/articles/360036883491-GenomicsDBImport
This tool ask as a requirement "--intervals", as, "One or more genomic intervals over which to operate".
I'm calling variants from Illumina HiSeq Exome, so I probably need a .bed list of Exomes.
I didn't find any similar resource in the GATK bundle, but maybe I just missed it?? https://console.cloud.google.com/storage/browser/genomics-public-data;tab=objects?forceOnObjectsSortingFiltering=false
Thank you very much in advance,