Published data sets using 10x Feature Barcoding?
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3.5 years ago
mk ▴ 290

How can I search for published data sets that use Feature Barcoding?

Background and caveats:

  1. The actual Cell Ranger output needs to be included with the publication: eg. features.tsv.gz, genes.tsv.gz, matrix.mtx.gz
  2. Feature Barcoding allows CellRanger to export droplet-based single-cell sequencing with paired expression of cell surface proteins for each barcode.
  3. There does not seem to be an explicit filter for this among 10x curated publications
  4. Although immune-related data is intuitively suited to this, it would be interesting to have some other data as well, incl. cancer, development, etc
10x single-cell 10x genomics feature barcoding • 978 views
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