plink to Bayescan conversion
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11 months ago
s0782801 • 0

I have used PGDspider to convert a plink ped file to a Bayescan file. My ped file has just 5 SNPs for 2 populations in it. However, In the Bayescan formatted file outputted from PGDspider there are 7 loci and Index 1-7 in the first column. Can someone explain how the index relate back to the SNPs , why are there 7 loci there ? plink ped and map file checked multiple times and only 5 Snps. Many thanks for your time.

Bayescan output [loci]=7

[populations]=2

Plink bayescan PGDspider SNP • 326 views
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