incompatibility of variant positions between my data and databases
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8 months ago

I use annnovar 2018 tool for variant annotations. But there is a problem for frameshift variants. My data has incompatibility with other databases. For example the variant in my data: p.R125fs (rs746835434), but in other databases it is T126fs. Always frameshift variant shows +1 aa position on databases. Bu they have same rsID. How to solve this? Is it about annovar or variant caller or annovar databases?

annovar variantannotation next-gen sequence SNP • 191 views
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