Question: Imputation on low coverage samples
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selplat21 • 20 wrote:
Hi all,
Does anyone have experience using BEAGLE on low coverage samples. I have about 500 individuals with ~3x genome-wide coverage and am trying to figure out the best arguments to use in BEAGLE to impute missing data.
Thank you.
Are these human samples? If not do you have a custom reference panel for your organism?