Question: Imputation on low coverage samples
gravatar for selplat21
10 weeks ago by
selplat2120 wrote:

Hi all,

Does anyone have experience using BEAGLE on low coverage samples. I have about 500 individuals with ~3x genome-wide coverage and am trying to figure out the best arguments to use in BEAGLE to impute missing data.

Thank you.

ADD COMMENTlink written 10 weeks ago by selplat2120

Are these human samples? If not do you have a custom reference panel for your organism?

ADD REPLYlink written 10 weeks ago by jean.elbers1.5k
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