Imputation on low coverage samples
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4.7 years ago
selplat21 ▴ 20

Hi all,

Does anyone have experience using BEAGLE on low coverage samples. I have about 500 individuals with ~3x genome-wide coverage and am trying to figure out the best arguments to use in BEAGLE to impute missing data.

Thank you.
next-gen popgen imputation sequencing • 984 views
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Are these human samples? If not do you have a custom reference panel for your organism?

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