Phasing haplotypes from genetic trios
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3.5 years ago
heskett ▴ 110

Hi all,

I am wondering if there is a tutorial or well documented pipeline anywhere to perform haplotype phasing of a genetic trio where we start with short read whole genome sequencing of two parents and one child. I know that this may be possible with SHAPEIT, EAGLE, or BEAGLE, but I can't find good documentation or confirm that this is possible with these tools. Thank you!

Best regards,

Michael Pre-Doctoral Fellow National Cancer Institute National Institute of Health, USA

whole genome sequencing genetic trio genome • 667 views
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