Entering edit mode
3.4 years ago
Sethzard
▴
20
Brain data, particualrly human brain data have very heterogeneus cell types, so it's important to normalise by cell type. I have used the package BrainInABlender to get a matrix of the proportions of each cell type in each sample
Sample_1 | Sample 2
Neuron 0.5 | 0.7
Microglia 0.5 | 0.3
The rows are the types of cells, the columns are the samples. I wanted to know what's the best way to add this as a counfounding variable in enrichment browser (or if that's not possible in DESeq2).