How to get enrichment of ERVs in differentially expressed peaks from ATAC-seq data?
0
0
Entering edit mode
3.4 years ago

Hi folks,

I performed ATAC-seq after knock-down of a chromatin remodeling factor and I have plenty of peaks that are differentially expressed (more or less accessible regions). Some other data indicates that there may be an antiviral response going on in the cells so I'd like to see if somehow the ERVs are being exposed in the chromatin upon knock-down.

How would you suggest I perform this task? Thank you!

ChIP-Seq ERVs ATAC-seq • 805 views
ADD COMMENT
0
Entering edit mode

Have you figured this out? I am looking to do similar analysis.

ADD REPLY

Login before adding your answer.

Traffic: 2578 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6