Entering edit mode
3.3 years ago
ah07seven
•
0
x = [Seq("AATTG"), Seq("AGGTC"), Seq("AGGAT"), Seq("AGGCG")]
countSetTable = motifs.create(x)
pwm = countSetTable.counts.normalize(pseudocounts= 0)
seq to matching total score: Seq("AATTG")
result:
total score = 2.5 ( A: 1.0, A: 0.25 , T: 0.25, T: 0.50, G: 0.50)