Similar posts • Search »

• Do specialized Hi-C databases exist?
  Dear colleagues, Does somebody know, if there are specialized databases for Hi-C raw data (paire...
• Hi-C data and structural variations
  Do you know how I would identify structural variations (e.g. inversions) from Hi-C matrices?
• Download Interaction Networks
  Hi BioStar Community, for my new project I have to consider directed interaction networks: e.g....
• Data integration of different results
  We have processed different datasets of Hi-C, RNA-Seq and Chip-Seq data. Now, with the results, w...
• How to get nuclear and mitochondrial gene sequences ?
  Hi, As part of a script that i'm writing, I need to get the sequence of any desired mitochondria...
• gnomAD: query utilitites
  Hi, I wanted to query the gnomAD database without having to download and configure the entire da...
• Tblastx Exception Error
  Hi, I am having some problems running tblastx locally on my HPC. I built my own database and I a...
• Blast Error in Python
  Hi everyone, i need help with something. Im doing this script: from Bio.Blast.Applicati...
• BLAST-2.6.0+ error: No alias or index file found for nucleotide database
  Hi all- I just started to use blast with blast-2.6.0+. When I create the blast database and try t...
• Hi-C programs recommandations
  Hi, I have a plant assembly which has been polished pilon. Next, I would like to use Hi-C to crea...
• Comprehensive database for RNA-seq transcriptome sequencing ?
  Hi,   I'm looking for a comprehensive database to download data of RNA-seq transcriptome sequen...
• Database for protein isofroms
  Hi, I would like to identify the protein isoforms that are expressed in human fibroblasts, eye a...
• Custom nr database with only arthropods ?
  Hi, I would like to make a custom database (nr) for blast local running but containing only arth...
• Blastn error, database creation problem, BLAST
  Hi, I am trying to blast contigs to the C. elegans reference genome sequence with the following ...
• Looking for breast cancer genes databases
  Hi all,   I'm looking for databases which contain list of genes which are involved or contribut...
• Retrieving large datasets from NCBI
  Hi all, How to retrieve large datasets from NCBI for a particular species and then to connect NCB...
• Local blast limit query search by GI list?
  Hi All,   I am trying to blast a file that contains about 42k fasta sequences against a local bl...
• blast database formatting issue
  Hi, I downloaded the nt nucleotide database using: $ ./update_blast.pl nt --decompress Whi...
• How To Learn To Build A Bioinformatics Oriented Web Site
  Hi, am absolutely new to programming and bioinformatics. Am building a web/server for a research ...
• Database/ list of Common CNVs in humans
  Hi All, I am searching for a database or even list for common CNVs in humans, I found one databa...
• BOLD systems database for qiime?
  Hi all! Do you know if BOLD Systems database store files like mosquito_fasta and mosquito_taxono...