Visualization of GO results using enrichplot
0
0
Entering edit mode
12 weeks ago

Hello

I am doing gene set analysis on DNA methylation microarray data (Illumina 450k and EPIC), and use the missMethyl package to do the analysis, and want to keep using that package because it accounts for some biases that occur when extracting the annotated genes and doing a GSEA on the extracted gene list. The output from missMethyl looks like this: `

       ONTOLOGY                               TERM    N       DE         P.DE          FDR                                                               
GO:0048856       BP   anatomical structure development 5888 2469.805 1.864842e-29 4.236548e-25
  

And I want to visualize the GO analysis results using the enrichplot package, or something else that give similar visualisations as described here , but it seems that enrichplot does not accept GO terms as input, only the output from their own enrichment analysis that looks completely different from the output from missMethyl.

Can you help me plot my GO analysis results? I want both a barplot and network plot.

Sincerely, Christine

R • 107 views
ADD COMMENT

Login before adding your answer.

Traffic: 1131 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6