Entering edit mode
3.9 years ago
Ana
▴
200
I have some bam files which I want to convert them to cram. My reference fasta file is not local, but is accessed instead via an https://.... Is there ant way/tool that I can use to make this happen? I just used this:
samtools view -C -T http://www.bc.ca/downloads/genomes/9606/hg38_no_alt/bwa_0.7.6a_ind/genome/hg38_no_alt.fa ./l_samples/sampleA.bam