Question: Molecular Dynamics Of Glycosylated Protein
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gravatar for srikrish.sree
7.3 years ago by
srikrish.sree20 wrote:

I need to perform a MD simulation of a glycosylated protein. I tried using GROMACS 3.2. But it is not able to read the glycosylation. Suggest me some reliable MD platforms to use. Can higher version of GROMACS be used??

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ADD COMMENTlink modified 5.9 years ago by Biostar ♦♦ 20 • written 7.3 years ago by srikrish.sree20
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gravatar for João Rodrigues
7.3 years ago by
João Rodrigues2.5k
Stanford University, U
João Rodrigues2.5k wrote:

You need to generate a topology for the carbohydrate molecule. Try the PRODRG server or this one: http://haddock.chem.uu.nl/enmr/services/GLYCANS/

ADD COMMENTlink written 7.3 years ago by João Rodrigues2.5k
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