Entering edit mode
3.3 years ago
Romylland
▴
10
Hi,
Need some help. I need a peak call file with read counts for some downstream analysis. I have my BAM file, I used MACS2 to get the peak calls, next I used Samtools bedcov but I am not familiar with these tools therefore I don't know bedcov output header to identify the reads count if any. How may I get the reads count falling between the position coordinate?
Thanks a lot. Will give it a try now and keep u posted :)
Was successful, thanks you for your support. Still got one last question the last column of featureCounts output I guess is my read counts, right? Thanks [ATpoint]
Yep, that is correct.