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Question: Annotate PBMC scRNA-seq data
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gravatar for yzhao140
4 weeks ago by
yzhao140 • 0
yzhao140 • 0 wrote:

Hi, all! I am dealing with this dataset https://support.10xgenomics.com/single-cell-multiome-atac-gex/datasets/1.0.0/pbmc_granulocyte_sorted_3k. I need to identify the cell type for each cell then do unpervised clustering etc. Do you have any suggestions?

rna-seq • 134 views
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modified 4 weeks ago by igor ♦ 12k • written 4 weeks ago by yzhao140 • 0
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gravatar for igor
4 weeks ago by
igor ♦ 12k
United States
igor ♦ 12k wrote:

You can check this tutorial for working with a scATAC and scRNA-seq dataset where they also use PBMC data: https://satijalab.org/signac/articles/pbmc_vignette.html
ADD COMMENT • link written 4 weeks ago by igor ♦ 12k

Thank you very much! I will have a try.

ADD REPLY • link written 29 days ago by yzhao140 • 0

So what can I do if I only want to use scRNA-seq data to do annotations?

ADD REPLY • link written 17 days ago by yzhao140 • 0

There are multiple discussions on this site about scRNA-seq cell annotation.

ADD REPLY • link written 16 days ago by igor ♦ 12k
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