Question: Annotate PBMC scRNA-seq data
0
gravatar for yzhao140
4 weeks ago by
yzhao1400
yzhao1400 wrote:

Hi, all! I am dealing with this dataset https://support.10xgenomics.com/single-cell-multiome-atac-gex/datasets/1.0.0/pbmc_granulocyte_sorted_3k. I need to identify the cell type for each cell then do unpervised clustering etc. Do you have any suggestions?

rna-seq • 134 views
ADD COMMENTlink modified 4 weeks ago by igor12k • written 4 weeks ago by yzhao1400
1
gravatar for igor
4 weeks ago by
igor12k
United States
igor12k wrote:

You can check this tutorial for working with a scATAC and scRNA-seq dataset where they also use PBMC data: https://satijalab.org/signac/articles/pbmc_vignette.html

ADD COMMENTlink written 4 weeks ago by igor12k

Thank you very much! I will have a try.

ADD REPLYlink written 29 days ago by yzhao1400

So what can I do if I only want to use scRNA-seq data to do annotations?

ADD REPLYlink written 17 days ago by yzhao1400

There are multiple discussions on this site about scRNA-seq cell annotation.

ADD REPLYlink written 16 days ago by igor12k
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