I'm trying to download fastq-data from the SRA using dms_tools2 and fastqFromSRA. Therefore I tried following the instruction from
Everything works out just fine, until it reaches the point, where it should download from SRA. Here I get the error:
TypeError: '<' not supported between instances of 'str' and 'int'
from the line
dms_tools2.sra.fastqFromSRA(samples, "fastq-dump", fastqdir, aspera=None,)
Also it seems to find the fastq-dump from the SRAToolkit.
I hope someone can give me an Idea, on how to solve this.