Hello everyone. I got a problem when I run rgi heatmap. I tried to update pandas but the problem remains. Could you help me? Thanks a lot! this is the command:
rgi heatmap --input heatmap/ -o /home/STUDENTI/luca.rubinetti/result_heatmap -cat drug_class -clus samples
this is the output:
Traceback (most recent call last): File "/home/STUDENTI/luca.rubinetti/anaconda3/envs/rgi/bin/rgi", line 4, in MainBase() File "/home/STUDENTI/luca.rubinetti/anaconda3/envs/rgi/lib/python3.8/site-packages/app/MainBase.py", line 82, in init getattr(self, args.command)() File "/home/STUDENTI/luca.rubinetti/anaconda3/envs/rgi/lib/python3.8/site-packages/app/MainBase.py", line 336, in heatmap self.heatmap_run(args) File "/home/STUDENTI/luca.rubinetti/anaconda3/envs/rgi/lib/python3.8/site-packages/app/MainBase.py", line 357, in heatmap_run obj.run() File "/home/STUDENTI/luca.rubinetti/anaconda3/envs/rgi/lib/python3.8/site-packages/app/Heatmap.py", line 455, in run complete_class_df= complete_class_df.set_index(["resistance_mechanism", "gene_family"], append=True)["drug_class"].apply(pd.Series).stack() File "/home/STUDENTI/luca.rubinetti/anaconda3/envs/rgi/lib/python3.8/site-packages/pandas/core/generic.py", line 5462, in getattr return object.getattribute(self, name) AttributeError: 'Series' object has no attribute 'stack'
