WGCNA depencency from GO.db
0
0
Entering edit mode
3.2 years ago
acs • 0

Hello, I am trying to install WGCNA package in Linux Lite 5.2 Terminal but this error message appears:

install.packages("WGCNA")
Installing package into ‘/usr/local/lib/R/site-library’
(as ‘lib’ is unspecified)
Warning: dependencies ‘GO.db’, ‘AnnotationDbi’ are not available
also installing the dependencies ‘farver’, ‘scales’, ‘ggplot2’, ‘viridis’, ‘Hmisc’

probando la URL 'https://cloud.r-project.org/src/contrib/farver_2.0.3.tar.gz'
Content type 'application/x-gzip' length 1279579 bytes (1.2 MB)
==================================================
downloaded 1.2 MB

probando la URL 'https://cloud.r-project.org/src/contrib/scales_1.1.1.tar.gz'
Content type 'application/x-gzip' length 515201 bytes (503 KB)
==================================================
downloaded 503 KB

probando la URL 'https://cloud.r-project.org/src/contrib/ggplot2_3.3.3.tar.gz'
Content type 'application/x-gzip' length 3058840 bytes (2.9 MB)
==================================================
downloaded 2.9 MB

probando la URL 'https://cloud.r-project.org/src/contrib/viridis_0.5.1.tar.gz'
Content type 'application/x-gzip' length 1906320 bytes (1.8 MB)
==================================================
downloaded 1.8 MB

probando la URL 'https://cloud.r-project.org/src/contrib/Hmisc_4.4-2.tar.gz'
Content type 'application/x-gzip' length 757386 bytes (739 KB)
==================================================
downloaded 739 KB

probando la URL 'https://cloud.r-project.org/src/contrib/WGCNA_1.69.tar.gz'
Content type 'application/x-gzip' length 1168289 bytes (1.1 MB)
==================================================
downloaded 1.1 MB

ERROR: failed to lock directory ‘/usr/local/lib/R/site-library’ for modifying
Try removing ‘/usr/local/lib/R/site-library/00LOCK-farver’
ERROR: dependency ‘farver’ is not available for package ‘scales’
* removing ‘/usr/local/lib/R/site-library/scales’
ERROR: dependency ‘scales’ is not available for package ‘ggplot2’
* removing ‘/usr/local/lib/R/site-library/ggplot2’
ERROR: dependency ‘ggplot2’ is not available for package ‘viridis’
* removing ‘/usr/local/lib/R/site-library/viridis’
ERROR: dependencies ‘ggplot2’, ‘viridis’ are not available for package ‘Hmisc’
* removing ‘/usr/local/lib/R/site-library/Hmisc’
ERROR: dependencies ‘Hmisc’, ‘GO.db’, ‘AnnotationDbi’ are not available for package ‘WGCNA’
* removing ‘/usr/local/lib/R/site-library/WGCNA’

The downloaded source packages are in
    ‘/tmp/Rtmpl6nndh/downloaded_packages’
Warning messages:
1: In install.packages("WGCNA") :
  installation of package ‘farver’ had non-zero exit status
2: In install.packages("WGCNA") :
  installation of package ‘scales’ had non-zero exit status
3: In install.packages("WGCNA") :
  installation of package ‘ggplot2’ had non-zero exit status
4: In install.packages("WGCNA") :
  installation of package ‘viridis’ had non-zero exit status
5: In install.packages("WGCNA") :
  installation of package ‘Hmisc’ had non-zero exit status
6: In install.packages("WGCNA") :
  installation of package ‘WGCNA’ had non-zero exit status

I have also try to install the dependecy packages individually but it seems that there is a specific problem with the package GO.db Any idea about how to solve it, please?

Thank you

RNA-Seq • 723 views
ADD COMMENT

Login before adding your answer.

Traffic: 1967 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6