Entering edit mode
3.2 years ago
acs
•
0
Hello, I am trying to install WGCNA package in Linux Lite 5.2 Terminal but this error message appears:
install.packages("WGCNA") Installing package into ‘/usr/local/lib/R/site-library’ (as ‘lib’ is unspecified) Warning: dependencies ‘GO.db’, ‘AnnotationDbi’ are not available also installing the dependencies ‘farver’, ‘scales’, ‘ggplot2’, ‘viridis’, ‘Hmisc’ probando la URL 'https://cloud.r-project.org/src/contrib/farver_2.0.3.tar.gz' Content type 'application/x-gzip' length 1279579 bytes (1.2 MB) ================================================== downloaded 1.2 MB probando la URL 'https://cloud.r-project.org/src/contrib/scales_1.1.1.tar.gz' Content type 'application/x-gzip' length 515201 bytes (503 KB) ================================================== downloaded 503 KB probando la URL 'https://cloud.r-project.org/src/contrib/ggplot2_3.3.3.tar.gz' Content type 'application/x-gzip' length 3058840 bytes (2.9 MB) ================================================== downloaded 2.9 MB probando la URL 'https://cloud.r-project.org/src/contrib/viridis_0.5.1.tar.gz' Content type 'application/x-gzip' length 1906320 bytes (1.8 MB) ================================================== downloaded 1.8 MB probando la URL 'https://cloud.r-project.org/src/contrib/Hmisc_4.4-2.tar.gz' Content type 'application/x-gzip' length 757386 bytes (739 KB) ================================================== downloaded 739 KB probando la URL 'https://cloud.r-project.org/src/contrib/WGCNA_1.69.tar.gz' Content type 'application/x-gzip' length 1168289 bytes (1.1 MB) ================================================== downloaded 1.1 MB ERROR: failed to lock directory ‘/usr/local/lib/R/site-library’ for modifying Try removing ‘/usr/local/lib/R/site-library/00LOCK-farver’ ERROR: dependency ‘farver’ is not available for package ‘scales’ * removing ‘/usr/local/lib/R/site-library/scales’ ERROR: dependency ‘scales’ is not available for package ‘ggplot2’ * removing ‘/usr/local/lib/R/site-library/ggplot2’ ERROR: dependency ‘ggplot2’ is not available for package ‘viridis’ * removing ‘/usr/local/lib/R/site-library/viridis’ ERROR: dependencies ‘ggplot2’, ‘viridis’ are not available for package ‘Hmisc’ * removing ‘/usr/local/lib/R/site-library/Hmisc’ ERROR: dependencies ‘Hmisc’, ‘GO.db’, ‘AnnotationDbi’ are not available for package ‘WGCNA’ * removing ‘/usr/local/lib/R/site-library/WGCNA’ The downloaded source packages are in ‘/tmp/Rtmpl6nndh/downloaded_packages’ Warning messages: 1: In install.packages("WGCNA") : installation of package ‘farver’ had non-zero exit status 2: In install.packages("WGCNA") : installation of package ‘scales’ had non-zero exit status 3: In install.packages("WGCNA") : installation of package ‘ggplot2’ had non-zero exit status 4: In install.packages("WGCNA") : installation of package ‘viridis’ had non-zero exit status 5: In install.packages("WGCNA") : installation of package ‘Hmisc’ had non-zero exit status 6: In install.packages("WGCNA") : installation of package ‘WGCNA’ had non-zero exit status
I have also try to install the dependecy packages individually but it seems that there is a specific problem with the package GO.db Any idea about how to solve it, please?
Thank you