Assembly based structural variants detection
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10 months ago
rthapa ▴ 50

Hi, I want to use assembly based structural variants detection tools like syri or mum&co to call structural variants by comparing the denovo assembly of genome with the reference genome. I am working with circular genome of bacteria. The de novo assembly of genome doesn't have the same start point as reference genome. I wonder if I need to fix the start point using some tools like circulator to fix the start point before calling the structural variants. Any suggestion will be appreciated. Thanks

Assembly structural variants syri mumandco • 272 views
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