How to analyse lncRNA

Question

[darshininambiar]

Dear All,

I am new to bioinformatics and my research needs to analyse lncRNA from a RNA Seq data. I have tried to use GSEA but realised that most of the data set in GSEA doesn't match with lncRNA. Can you kindly guide me if there is any online platform like GSEA to analyse lncRNA?

Thanks in advance

Regards, Priya

Answer 1

[Novogene]

Hi Priya,

Here are some tool may help you to analyse lncRNA.

1. Lncident(LncRNAs identification): A novel method for rapid identification of lncRNAs utilizing sequence intrinsic composition features and open reading frame information based on support vector machine model.

2. lncRNA-screen: lncRNA-screen is available as open-source software on GitHub. https://github.com/NYU-BFX/lncRNA-screen.

3. LncRRIsearch: A web server for comprehensive prediction of human and mouse lncRNA-lncRNA and lncRNA-mRNA interaction. LncRRIsearch is publicly accessible at http://rtools.cbrc.jp/LncRRIsearch/.

4. LncSEA: LncSEA focuses on accommodating various available resources of human lncRNAs and performs annotation and enrichment analyses of lncRNA lists submitted by users. http://bio.liclab.net/LncSEA/index.php

Answer 2

[Novogene]

Plus, This pdf introduces the related content of lncRNA analysis, hope it will be helpful to you. The lncRNA Toolkit: Databases and In Silico Tools https://www.mdpi.com/2311-553X/6/4/49/pdf