I want to use blastclust program from standard standalone blast installation. I tried to cluster 26 strains of E. Coli;
blastclust -i e_coli.fna -o outfile -p F -L .9 -b T -S 95
It gave the following output;
Jan 17, 2011 12:43 PM Start clustering of 26 queries Segmentation fault
Then I tried it with some random lines deleted from some sequences (while keeping the same paameters) and it worked.
Any suggestions what could be wrong and how to fix it?
PS: please let me know and I will send you the files!