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  Hi all, I am trying to do some QC on RNA-seq raw reads. According to FastQC results, there is so...
• Have Anyone Done Bacterial Transcriptomics Using Miseq?
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• How to identify TSS sites from bacterial RNA-Seq data?
  Hello all, I know this has been asked a lot, but I am trying to predict TSS sites with bacterial...
• Bacterial signal in metatranscriptome data
  Hi all. I have some RNA-Seq data from the sequencing of a green algae in co- culture with a bacte...
• What Are Recommend Approaches For Studying Bacterial Rna-Seq Data
  I have a data from Hi-seq for a bacterial RNA-seq , however, it is an over kill, with any aligner...
• Help required for Bacterial RNAseq data
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• Interpreting de novo contig output
  Afternoon everyone, I am doing some viral RNA-seq work and I got back bacterial rRNA contigs (e...
• How to pull out ncRNA from RNA Seq experiment for a bacterial species?
  I'm doing RNA Seq for a bacterial species and am interested in finding the expression of non codi...
• High FPKM values for bacterial genes
  I mapped RNA-seq reads to a bacterial genome and found most genes have a much higher expression l...
• Using bowtie2 to create BAM files to view strand-specific coverage in Artemis
  I'm trying to map fastq files from bacterial RNA-seq studies and then view the bam files in Artem...
• retrieve normalised count data from DESeq2
  Hello, sorry if this is a really stupid question but I have been struggling with this for a week ...
• Bacterial RNA seq
  How many samples can we pooled for Bacterial RNA seq in Miseq system and what will be ideal reads
• Bacterial Rna-Seq
  I am doing an experiment to check the differential expression of bacterial genes under different ...
• Bacterial transcriptome with Rockhopper
  Hello there, I am facing problem in interpreting Rockhopper output. I have bacterial RNAseq data ...
• Problem combining ptt, rnt files
  Hi,  I'm analyzing bacterial RNA-seq data with EDGE-pro. The bacterial genome consists of the ch...
• BETA for RNA-Seq and ChIP-Seq Data Integration
  Hello, I have a Cuffdiff file output from RNA-Seq study and a bed file from MACS from my ChIP-Se...
• Bacterial Transcriptional Start Site Analysis By Using Rna-Seq Data.
  Dear all, For the purpose of detecting transcriptional start sites (TSS) in bacteria, is there a...
• Tools for functional enrichment analysis using own genome annotation
  I am analyzing RNA-seq data for 5 different bacterial strains, 3 of which are "model" organisms (...