Contig Ploidy Model
0
1
Entering edit mode
14 months ago
akshitiz09 ▴ 10

Hi everyone,

I have some WGS data for humans to process and I'm using gatk for CNV calling. [https://gatk.broadinstitute.org/hc/en-us/articles/360035531152--How-to-Call-common-and-rare-germline-copy-number-variant] I'm running DetermineGermlineContigPloidy in CASE MODE. I have one file that needs to be processed. How do I generate contig-ploidy model files to use this tool?

Thank you

gatk DetermineGermlineContigPloidy • 430 views
ADD COMMENT

Login before adding your answer.

Traffic: 1666 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6