I would like to use the picard's MarkDuplicates to count the number of duplicates in a bam file. However, I have not yet run samtools fixmate to ensure that all mate-pair information is correct. Will this effect the output from MarkDuplicates? Does MarkDuplicates work even if mate pair information is not 'fixed'?
Question: Does Markduplicates Work If Mate Pair Information Is Not 'Fixed'?
6.7 years ago by
ian.streeter • 10
ian.streeter • 10 wrote:
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