Question: What Software Do I Use To Calculate Ld Coefficients With Msat Data With No Phase Information?
gravatar for mark.aaron.fisher
8.4 years ago by
mark.aaron.fisher0 wrote:

I have genotypes for diploid, unrelated individuals for ~100 microsatellite loci. I was hoping to calculate the composite (I'm assuming this is my only option if I don't have phase data) LD coefficients for each pair of loci.

I have been unable to find software that can accomodate the facts that my loci are NOT biallelic and that I don't have phase data.

Any suggestions out there?? Many thanks!

linkage ld • 2.0k views
ADD COMMENTlink written 8.4 years ago by mark.aaron.fisher0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2029 users visited in the last hour