Question: What Software Do I Use To Calculate Ld Coefficients With Msat Data With No Phase Information?
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gravatar for mark.aaron.fisher
8.4 years ago by
mark.aaron.fisher0 wrote:

I have genotypes for diploid, unrelated individuals for ~100 microsatellite loci. I was hoping to calculate the composite (I'm assuming this is my only option if I don't have phase data) LD coefficients for each pair of loci.

I have been unable to find software that can accomodate the facts that my loci are NOT biallelic and that I don't have phase data.

Any suggestions out there?? Many thanks!

linkage ld • 2.0k views
ADD COMMENTlink written 8.4 years ago by mark.aaron.fisher0
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