Tea Pipeline For Hg19
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10.0 years ago
mark.dunning ▴ 230

Hi all,

There is interest in our group for running the Tea pipeline on our cancer dataset

http://compbio.med.harvard.edu/Tea/

The package download seems to be setup for hg18, but our dataset was aligned to hg19. Has anyone tried running the pipeline on hg19 data? If so, could I get some pointers about how to modify the resources that the package comes bundled with.

Regards,

Mark

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