Question: Convert Dosage Files To Bed Files
0
gravatar for hubStar
6.5 years ago by
hubStar0
hubStar0 wrote:

Hi,

I was wondering whether anybody knows if there is a way to convert dosage files created through imputation into PED/BED format to be read by Plink? I know Plink can read dosage files directly, but I need to get the genotypes back into BED format if possible. Any advice would be very much appreciated!

Thanks

bed imputation • 4.0k views
ADD COMMENTlink modified 6.5 years ago by Joey410 • written 6.5 years ago by hubStar0
3
gravatar for Joey
6.5 years ago by
Joey410
Seattle
Joey410 wrote:

First, use GTOOL www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html to convert them to PED/MAP format. Then use PLINK to BED/BIM/FAM format.

ADD COMMENTlink written 6.5 years ago by Joey410

How would you go about using gtool to convert dosage files?

ADD REPLYlink modified 5.6 years ago • written 5.6 years ago by Click downvote670
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1469 users visited in the last hour