Question: Convert Dosage Files To Bed Files
gravatar for hubStar
7.5 years ago by
hubStar0 wrote:


I was wondering whether anybody knows if there is a way to convert dosage files created through imputation into PED/BED format to be read by Plink? I know Plink can read dosage files directly, but I need to get the genotypes back into BED format if possible. Any advice would be very much appreciated!


bed imputation • 4.5k views
ADD COMMENTlink modified 7.5 years ago by Joey410 • written 7.5 years ago by hubStar0
gravatar for Joey
7.5 years ago by
Joey410 wrote:

First, use GTOOL to convert them to PED/MAP format. Then use PLINK to BED/BIM/FAM format.

ADD COMMENTlink written 7.5 years ago by Joey410

How would you go about using gtool to convert dosage files?

ADD REPLYlink modified 6.6 years ago • written 6.6 years ago by Click downvote680
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