How Can I Programmatically Obtain An Sra Srp000Id From A Geo Gse00Id?

Question

[14134125465346445]

How can I programmatically obtain the list of SRA SRP000ids from a GEO GSE00id? Ideally a tool that runs on a headless terminal.

Answer 1

[SES]

One approach would be to use NCBI's E-Utils in your programming language of choice. Another approach would be to use the SRAdb Bioconductor package, which seems like it might work from looking at the manual. (Note: see also From A Geo Gsm Id, How To Obtain The Corresponding Raw File(S) Hosted On Sra? for some other suggestions).