Question: Config File For Running Small Files On Soapdenovo.
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gravatar for joaslucas
6.7 years ago by
joaslucas70
joaslucas70 wrote:

I have a single, small RNA-seq file from bacteria (~2 millions reads). it is actually my unaligned file of SOAPaligner that I got after getting rid of Macrophage RNA contamination. I want to use this single file for denovo transcriptome assembly in SOAPdenovo. How can I make my config file in this case.

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ADD COMMENTlink modified 4.5 years ago by Biostar ♦♦ 20 • written 6.7 years ago by joaslucas70
2
gravatar for SES
6.7 years ago by
SES8.2k
Vancouver, BC
SES8.2k wrote:

There is an example config file in the manual, and at the bottom of the SOAPdenovo-Trans webpage. You can modify that file based on your data and it should work fine.

ADD COMMENTlink modified 6.7 years ago • written 6.7 years ago by SES8.2k
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