Question: (Closed) How Do I Apply Tfbs Dna Motifs To A Genome?
gravatar for Sam
8.9 years ago by
Sam40 wrote:

Possible Duplicate:
Transcription Factor Binding Site Prediction


I am interested in learning how to apply TFBS matrices (such as those available from TRANSFAC and JASPAR) to the HG18 and HG19 genomes. Is there a tool out there to accomplish this? Is there some well-established threshold to set when calculating scores? Are these matrices typically applied to the regions upstream of known transcripts/genes? If not, where else?

Thank you in advance for your help!

binding pssm dna transcription • 1.8k views
ADD COMMENTlink modified 8.7 years ago by Lars Juhl Jensen11k • written 8.9 years ago by Sam40
Please log in to add an answer.
The thread is closed. No new answers may be added.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1277 users visited in the last hour