Question: (Closed) How Do I Apply Tfbs Dna Motifs To A Genome?
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gravatar for Sam
8.1 years ago by
Sam40
Sam40 wrote:

Possible Duplicate:
Transcription Factor Binding Site Prediction

Hello,

I am interested in learning how to apply TFBS matrices (such as those available from TRANSFAC and JASPAR) to the HG18 and HG19 genomes. Is there a tool out there to accomplish this? Is there some well-established threshold to set when calculating scores? Are these matrices typically applied to the regions upstream of known transcripts/genes? If not, where else?

Thank you in advance for your help!

binding pssm dna transcription • 1.6k views
ADD COMMENTlink modified 8.0 years ago by Lars Juhl Jensen11k • written 8.1 years ago by Sam40
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