Question: How To Extract Scores From Wigfix Files
0
gravatar for dustar1986
6.5 years ago by
dustar1986300
USA
dustar1986300 wrote:

Hi,

I've downloaded "Conservation scores for alignments of 45 vertebrate genomes with Human" and "Conservation scores for alignments of primates genomes with Human" from UCSC in WigFix format.

I wanna extract scores for each position within a certain region and get an output in bedgraph format.

And score should be 0 when the position is not recorded in Wig file.

The output could be like:

Chrom Start End Score

I know bigWigToBedGraph can extract score from bigWig file. Is there any similar tool to extract wigFix file?

Or is there an alternative way to do it?

Thanks for help.

• 4.2k views
ADD COMMENTlink modified 6.5 years ago by KCC3.9k • written 6.5 years ago by dustar1986300

Check out this post: Chromosome Position In The Ucsc Phylop46Way.Placental.Wigfix File

ADD REPLYlink written 6.5 years ago by Manu Prestat3.9k
0
gravatar for KCC
6.5 years ago by
KCC3.9k
Cambridge, MA
KCC3.9k wrote:

Use the wigToBigWig utility found here: http://hgdownload.cse.ucsc.edu/admin/exe/

Then you can use bigWigToBedGraph

ADD COMMENTlink written 6.5 years ago by KCC3.9k
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