(1)In the SNP raw data from csv file. Allele1 - Forward, Allele2 - Forward, Allele1 - Top, Allele2 - Top,...
In the Illumina® SNP Genotyping “TOP/BOT” Strand and “A/B” Allele,there is no explanation for the Forward Allele.
(2) In the Plink data ,two forward allele columns from csv file（coupled with minor and major allele）can be used.
How make the raw SNP or Plink data available for numeric regression?If I want to make a regression ,which one column should I pick up with the Biallelic markers? Thanks!