What kind of analysis and visualization methods would one use for checking the quality of RNA Seq count data...?
Basically looking for methods to detect sample contribution, replicates comparison, sample outliers.. etc! All I have to start with is Count Data... I have normalised it also using the DESeq method....
For visualization, I am looking for methods like MAplots, boxplots etc!! Suggestions and code snippets are very more welcomed
Thanks in advance