Question: How To Make Cytoscape Export Network In Cluster Format (Non-Sif)
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gravatar for gundalav
6.5 years ago by
gundalav290
La La Land
gundalav290 wrote:

SIF format reports the network in pairwise data format. Is there a way to export it in cluster format? I.e. every line contain genes/protein within each network. For example image here contain 24 clusters, I'd like to have each cluster to have it's gene printed in one line.

network cytoscape • 1.8k views
ADD COMMENTlink modified 6.5 years ago • written 6.5 years ago by gundalav290

Hello!

Can you give more information about this format?

ADD REPLYlink written 6.5 years ago by Leandro Lima930

Maybe this package can help you.

http://pynetconv.sourceforge.net

ADD REPLYlink written 6.5 years ago by Leandro Lima930

Updated the OP. I want Cytoscape to output it.

ADD REPLYlink written 6.5 years ago by gundalav290
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