Question

Predicting Rna / Dna Binding Site In Proteins

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Entering edit mode

10.9 years ago

Mateusz ▴ 70

Hi,

What kind of software do you use in order to predict RNA / DNA binding sites? I know I can google it, however I would love to hear feedback regarding precision etc.

So far I've found BindN and I know methods used in Genesilico MetaServer. What else do you use?

Cheers!

protein dna rna binding interaction • 2.5k views

ADD COMMENT • link updated 10.9 years ago by Noam N. Kremen ▴ 60 • written 10.9 years ago by Mateusz ▴ 70

score 1 · Answer 1 · 2013-05-29

1

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10.9 years ago

Noam N. Kremen ▴ 60

PFP attempts to predict via electrostatics. Paper is here.

ADD COMMENT • link 10.9 years ago by Noam N. Kremen ▴ 60

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Thanks, I will give it a try! Unfortunately in this case I have only sequence, not a structure.

ADD REPLY • link 10.9 years ago by Mateusz ▴ 70