Question: Standalone Gc Correction Tools
gravatar for Plantae
5.8 years ago by
Plantae380 wrote:

hi, all,
i try to find CNVs from a high-depth resequenced sample (>30x), which is a plant species.
however, several CNV detect tools could only be used for human genomes,
i am wondering if there are some standalone tools that can get gc-corrected read counts using BAM file as inputs.
then we can use call CNVs based on these corrected values.

gc cnv • 2.2k views
ADD COMMENTlink modified 3.7 years ago by R Ravi10 • written 5.8 years ago by Plantae380
gravatar for R Ravi
3.7 years ago by
R Ravi10
R Ravi10 wrote:


Why don't you try CNVnator, it does GC corrected profile analysis using mean shift approach.

Link: CNVnator

ADD COMMENTlink written 3.7 years ago by R Ravi10
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