Standalone Gc Correction Tools
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11.0 years ago
Plantae ▴ 390

hi, all,
i try to find CNVs from a high-depth resequenced sample (>30x), which is a plant species.
however, several CNV detect tools could only be used for human genomes,
i am wondering if there are some standalone tools that can get gc-corrected read counts using BAM file as inputs.
then we can use call CNVs based on these corrected values.

gc cnv • 3.6k views
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Entering edit mode
8.8 years ago
R Ravi ▴ 30

Hi,

Why don't you try CNVnator, it does GC corrected profile analysis using mean shift approach.

Link: CNVnator

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