Question: Priority Of Blast Hits In Blast2Go
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gravatar for thiagomafra
6.2 years ago by
thiagomafra70
Brazil
thiagomafra70 wrote:

Hi all,

I'm using b2g4pipe for annotation of genomes. The first step is run blastx against some db (nr, swissprot, est, refseq), generating one xml file for each blastx_run, using parameter "-max_target_seqs 20". Therefore, each blastx will result in maximum 20 hits. When running b2g4pipe, I inform the directory containing the xml files generated by blastx.

My question is: how blast2go defines what the best blast hit the different database that will for mapping GO? Or better: how to set the priority of the hits in different databases? (eg: first Swissprot, second RefSeq, third NR, ...)

Could be clear in my question?

Anybody help me?

annotation • 2.2k views
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