How To Map Lncrna From Two Data Sources
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11.0 years ago
Cara • 0

Hi, I am new to bioinformatics. I have .fa files from two data sources about lncRNA transcripts. I only want to keep those lncRNA transcripts with overlap on the same strand between these two sources to avoid redundancy. How can I do this? What software should I use to run the .fa files?

map • 2.0k views
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you can use EMBOSS-skip-redundant tool to remove redundant reads. Alternatively you can remove redundant sequeces using awk (I generally use awk for these purposes; it's quite fast).

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