Question: How To Identify Spliceforms In A Gff File?
gravatar for sangerdude
7.0 years ago by
United States
sangerdude0 wrote:

Hi All,

I have a GFF3 file and i want to identify spliceforms from the file and separate them as independent lines of the file. I am currently using BCBio (or any better parser?). I think i will need to access the "Parent = ' '" data, but i am unable to access the information from the methods under GFF parse.

Has anyone dealt with such a problem before? Any help will be much appreciated.

gff3 • 1.4k views
ADD COMMENTlink written 7.0 years ago by sangerdude0

Where does the GFF3 file come from? Have you looked at examples of the type of data you are trying to extract in the file? This would show you what information you actually have access to.

ADD REPLYlink written 7.0 years ago by KCC4.0k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1268 users visited in the last hour