No T In Prephased Mach Output File
0
0
Entering edit mode
11.2 years ago
kindlychung ▴ 60

I just got some prephased genotype data, which is said to be the output of MaCH, and looks like this:

RS1->2001 HAPLO1 AAACAAGGAGGAGAAGGAAA ...
RS1->2001 HAPLO2 CAACAAAGAGGAGAAGGAAA ...
RS1->2002 HAPLO1 AAAAAAGGAGGAAAAGGAAA ...
RS1->2002 HAPLO2 CAACAAGGAGGAAGCAGAGC ...

Note there are no T's in it. I understand A pairs with T, so we can denote every T by A, but in that case, why do we have both C and G here?

imputation format • 1.5k views
ADD COMMENT

Login before adding your answer.

Traffic: 1561 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6