Installation of breakdancer by cloning the sourcecode (and subsequent building the code) fails because the submodule "build-common" can't be cloned.
I am following the instruction from the install.MD txt file present in the breakdancer-master.zip file that can be downloaded from the breakdancer github page.
The command I use is : git clone --recursive https://github.com/genome/breakdancer.git
The error I get is :
Cloning into 'breakdancer'...
remote: Counting objects: 3493, done.
remote: Compressing objects: 100% (1504/1504), done.
remote: Total 3493 (delta 1621), reused 3403 (delta 1532)
Receiving objects: 100% (3493/3493), 2.72 MiB | 1.66 MiB/s, done.
Resolving deltas: 100% (1621/1621), done.
Submodule 'build-common' (git://github.com/genome/build-common.git) registered for path 'build-common'
Cloning into 'build-common'...
fatal: unable to connect to github.com:
github.com[0: 126.96.36.199]: errno=Connection refused
Clone of 'git://github.com/genome/build-common.git' into submodule path 'build-common' failed